Journal article published in PLOS One, Vol 20, Issue 5, e0320862, 2025; DOI: https://doi.org/10.1371/journal.pone.0320862; PMC12064016. The datasets generated and analyzed during the current study are provided in Supplemental S1 File. The RNA-seq data is Protein Atlas Version 23 from the Human Protein Atlas website (https://www.proteinatlas.org/about/download, “RNA HPA cell line gene data” released 2023.06.19). All FASTQ files and aligned counts for the U.S. EPA TempO-seq data have been deposited into NCBI Gene Expression Omnibus under the accession number GSE288929 and are publicly available at: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288929. The R code is available through FigShare at: https://doi.org/10.23645/epacomptox.27341970.v1. This dataset is associated with the following publication: Word, L., C. Willis, R. Judson, L. Everett, S. Davidson-Fritz, D. Haggard, B. Chambers, J. Rogers, J. Bundy, I. Shah, N. Sipes, and J. Harrill. TempO-seq and RNA-seq Gene Expression Levels are Highly Correlated for Most Genes: A Comparison Using 39 Human Cell Lines. PLOS ONE. Public Library of Science, San Francisco, CA, USA, 20(5): e0320862, (2025).
TempO-seq and RNA-seq gene expression levels are highly correlated for most genes: A comparison using 39 human cell lines
L o a d i n g
Organization
United State Environmental Protection Agency - view all
Update frequencyunknown
Last updated3 weeks ago
OverviewRNA-SeqTempO-Seqgene expressionin vitro
Additional Information
KeyValue
Dcat Modified2024-10-30
Dcat Publisher NameU.S. EPA Office of Research and Development (ORD)
Guidhttps://doi.org/10.23719/1532288
Harvest Object Id48957677-9609-42b8-8bcd-3b69266b9730
Harvest Source Idb8e63f83-bbb9-45d3-a3de-09607cc9ff8a
Harvest Source TitleUSEPA Environmental Dataset Gateway
