Metafile contains github links for R code and input datasets (including those generated in our analysis and those publicly available) for probabilistic and deterministic crop footprint generation and field-level simulation analysis. This dataset is associated with the following publication: McCaffrey, K., E. Paulukonis, S. Raimondo, S. Sinnathamby, S. Purucker, and L. Oliver. A multi-scale approach for identification of potential pesticide use sites impacting vernal pool critical habitat in California. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, NETHERLANDS, 857(1): 159274, (2023).